usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 43.9824166666667 -1.48858333333333 30.8456666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 736 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 458 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 449 Number of spheres polar: 148, nonpolar: 157, out of current total: 449 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 34.06163 53.96200 -11.43928 8.34891 22.79781 40.68300 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 193 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 158 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 140 Spheres center of coords (x y z): 44.5066367857143 -1.96091135714286 34.4091035 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.87081095362378 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 24