usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 44.194 -1.4865 30.2221153846154 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 737 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 460 WARNING: removing a crystallographic sphere that is distance 1.06076623249423 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 456 Number of spheres polar: 130, nonpolar: 178, out of current total: 456 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 34.43931 54.09332 -11.35532 8.51230 20.70641 40.09875 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 195 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 151 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 134 Spheres center of coords (x y z): 44.5823280597015 -2.08005514925373 33.4850935820895 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.48784493809625 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 25