usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 43.8656538461539 -1.25980769230769 30.2593846153846 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 726 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 467 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 461 Number of spheres polar: 158, nonpolar: 167, out of current total: 461 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.93153 53.84322 -11.13918 8.73085 20.38348 39.97525 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 200 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 161 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 138 Spheres center of coords (x y z): 44.6886065217391 -2.29974094202899 33.8710607246377 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.65592749085943 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 26