usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 43.826 -1.44996153846154 30.3208846153846 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 714 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 457 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 453 Number of spheres polar: 151, nonpolar: 183, out of current total: 453 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.86719 53.64756 -11.42098 8.53020 22.94238 39.94012 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 269 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 236 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 216 Spheres center of coords (x y z): 44.8168886111111 -2.15474634259259 33.6612125462963 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.45809746195788 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 26