usefragsph not on There are 25 ligand heavy atoms Ligand center of coords (x y z): 43.81848 -1.57712 29.98876 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 751 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 462 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 458 Number of spheres polar: 147, nonpolar: 187, out of current total: 458 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.92085 53.74600 -11.40489 8.31246 21.06469 39.95734 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 187 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 156 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 143 Spheres center of coords (x y z): 44.5247244055944 -2.38533111888112 33.4355503496503 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.54365968817596 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 25