usefragsph not on There are 25 ligand heavy atoms Ligand center of coords (x y z): 43.53136 -1.35568 30.11988 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 801 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 474 WARNING: removing a crystallographic sphere that is distance 1.19633690906868 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 470 Number of spheres polar: 148, nonpolar: 201, out of current total: 470 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.57454 53.36700 -11.29024 8.48298 20.18088 40.04166 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 180 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 147 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 132 Spheres center of coords (x y z): 44.3237967424242 -2.22130378787879 33.8485321212121 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.50423580650967 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 15 Final number of spheres that are from crystallographic ligand: 24