usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 43.5626538461539 -1.20107692307692 30.1339230769231 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 791 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 462 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 456 Number of spheres polar: 149, nonpolar: 190, out of current total: 456 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.61318 53.52900 -11.08339 8.66796 22.94470 39.88313 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 183 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 157 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 133 Spheres center of coords (x y z): 43.7207518045113 -1.42948586466165 33.5642428571428 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.41914524314583 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 26