usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 43.5626538461539 -1.20107692307692 30.1339230769231 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 791 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 462 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 456 Number of spheres polar: 149, nonpolar: 190, out of current total: 456 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.61318 53.52900 -11.08339 8.66796 22.94470 39.88313 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 281 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 246 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 220 Spheres center of coords (x y z): 44.0412698636364 -1.19556436363636 33.4803757272727 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.50045724415995 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 26