usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 43.4143214285714 -0.977428571428571 30.7940714285714 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 796 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 476 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 469 Number of spheres polar: 149, nonpolar: 191, out of current total: 469 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.44836 53.41200 -10.94938 8.94082 23.00395 40.78075 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 289 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 259 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 242 Spheres center of coords (x y z): 44.2644157438017 -1.7644402892562 33.8901634710744 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.56050310682838 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 28