usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 43.5447777777778 -1.47011111111111 31.0890740740741 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 733 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 438 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 437 Number of spheres polar: 132, nonpolar: 159, out of current total: 437 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.78261 53.50900 -11.45424 8.43746 22.68233 40.93100 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 263 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 237 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 209 Spheres center of coords (x y z): 44.3484902870814 -1.99576488038278 33.4049484210526 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.83221299801138 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 27