usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 43.1064857142857 -2.11042857142857 32.0410285714286 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 816 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 514 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 503 Number of spheres polar: 129, nonpolar: 209, out of current total: 503 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.27541 53.04100 -12.03503 7.81710 23.20911 41.71319 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 310 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 285 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 257 Spheres center of coords (x y z): 44.6330135019455 -2.58347206225681 34.3088962256809 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.22286196078988 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 35