usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 43.0951764705882 -2.09844117647059 31.8639117647059 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 852 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 512 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 503 Number of spheres polar: 147, nonpolar: 219, out of current total: 503 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.14600 53.06886 -12.06390 7.84600 22.89229 41.47743 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 205 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 171 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 148 Spheres center of coords (x y z): 44.2589483783784 -2.36014628378378 34.3131850675676 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.03563551819509 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 34