usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 43.6322631578947 -3.24915789473684 29.3143157894737 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 556 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 350 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 346 Number of spheres polar: 103, nonpolar: 130, out of current total: 346 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.81066 53.42200 -13.17529 6.62057 19.35972 39.30895 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 143 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 119 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 97 Spheres center of coords (x y z): 45.0420871134021 -3.27202845360825 33.0569752577319 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.53249192023817 Final number of output spheres is: 45 Number of polar spheres: 5 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 20 Final number of spheres that are from crystallographic ligand: 19