usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 43.472052631579 -2.221 29.3885789473684 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 697 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 415 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 412 Number of spheres polar: 136, nonpolar: 148, out of current total: 412 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.93927 53.31993 -12.19215 7.70500 19.44872 39.33881 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 176 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 142 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 116 Spheres center of coords (x y z): 43.7815127586207 -2.09592396551724 33.06778 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.87011302843386 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 16 Final number of spheres that are from crystallographic ligand: 19