usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): 43.472052631579 -2.221 29.3885789473684 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 697 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 415 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 412 Number of spheres polar: 136, nonpolar: 148, out of current total: 412 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.93927 53.31993 -12.19215 7.70500 19.44872 39.33881 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 240 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 209 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 186 Spheres center of coords (x y z): 44.2500908602151 -2.03981913978495 33.3545548387097 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.45808685793831 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 19