usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 43.4196764705882 -1.9695 32.1423823529412 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 760 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 494 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 489 Number of spheres polar: 149, nonpolar: 193, out of current total: 489 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.65622 53.32900 -11.92897 7.84665 23.15023 42.08638 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 295 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 263 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 239 Spheres center of coords (x y z): 44.6973417573222 -2.37738251046025 34.0618715481172 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.10378542981072 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 34