usefragsph not on There are 25 ligand heavy atoms Ligand center of coords (x y z): 43.56052 -1.02372 31.0862 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 713 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 425 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 419 Number of spheres polar: 138, nonpolar: 153, out of current total: 419 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.64420 53.35600 -10.95148 8.93216 23.02137 40.96100 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 185 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 150 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 135 Spheres center of coords (x y z): 44.1240141481482 -1.49169814814815 34.1657687407407 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.68177348454795 Final number of output spheres is: 45 Number of polar spheres: 15 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 25