usefragsph not on There are 25 ligand heavy atoms Ligand center of coords (x y z): 43.61584 -1.0292 31.09 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 733 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 422 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 416 Number of spheres polar: 129, nonpolar: 154, out of current total: 416 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.61732 53.48950 -11.01620 8.86140 22.92483 40.95079 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 249 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 219 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 202 Spheres center of coords (x y z): 44.3675981683168 -1.90108455445545 34.128210049505 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.08163760760109 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 25