usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 43.3557142857143 -2.21785714285714 29.8372857142857 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 741 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 444 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 439 Number of spheres polar: 148, nonpolar: 190, out of current total: 439 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.70303 53.12078 -12.12724 7.76538 20.01249 39.82959 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 181 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 149 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 133 Spheres center of coords (x y z): 44.5283123308271 -2.48108578947368 33.5956659398496 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.94264954187649 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 21