usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 43.6487619047619 -2.2392380952381 29.737619047619 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 626 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 387 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 381 Number of spheres polar: 120, nonpolar: 177, out of current total: 381 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.77849 53.57714 -12.06630 7.68300 19.86766 39.64000 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 151 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 130 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 116 Spheres center of coords (x y z): 44.6373750862069 -2.56113663793103 33.5922949137931 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.05950815210817 Final number of output spheres is: 45 Number of polar spheres: 11 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 21