usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 43.2224761904762 -2.31719047619048 29.9351428571429 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 652 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 417 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 412 Number of spheres polar: 136, nonpolar: 179, out of current total: 412 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.51309 53.08200 -12.22339 7.35653 20.21965 39.92692 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 175 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 143 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 125 Spheres center of coords (x y z): 44.2100532 -2.4603004 33.56221464 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.95837029969698 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 21