usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 43.177 -2.38495833333333 30.8176666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 743 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 454 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 449 Number of spheres polar: 121, nonpolar: 182, out of current total: 449 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.50906 53.07477 -12.36925 7.39681 23.34752 40.81370 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 269 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 238 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 223 Spheres center of coords (x y z): 44.4385392825112 -2.42727578475336 34.1268139461884 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.87867575533414 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 24