usefragsph not on
There are 39 ligand heavy atoms
Ligand center of coords (x y z): -3.19341025641026 5.23387179487179 25.5064358974359
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1058
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 570
WARNING: removing a crystallographic sphere that is distance 7.90985240064567 angstroms from closest receptor atom
WARNING: removing a crystallographic sphere that is distance 7.98021904461275 angstroms from closest receptor atom
WARNING: removing a crystallographic sphere that is distance 8.24960362684172 angstroms from closest receptor atom
WARNING: removing a crystallographic sphere that is distance 7.53810858239651 angstroms from closest receptor atom
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 564
Number of spheres polar: 187, nonpolar: 217, out of current total: 564
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -13.11917 6.72820 -4.56634 15.22149 15.53323 35.49392
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 334
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 283
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 260
Spheres center of coords (x y z): -3.6663885 5.69763515384616 25.2431475769231
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.74943504560714
Final number of output spheres is: 60
Number of polar spheres: 19
Number of nonpolar spheres: 23
Number of spheres that are near neither polar nor nonpolar receptor atoms: 18
Final number of spheres that are from crystallographic ligand: 35