usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): -2.50943243243243 4.97943243243243 24.1521891891892 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1066 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 533 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 529 Number of spheres polar: 204, nonpolar: 180, out of current total: 529 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.31784 7.47508 -4.70012 14.96946 14.28009 34.13966 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 213 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 164 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 154 Spheres center of coords (x y z): -2.93286441558442 4.05476175324675 23.6610061038961 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.44875575116424 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 37