usefragsph not on There are 10 ligand heavy atoms Ligand center of coords (x y z): 9.3154 19.895 19.9972 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 618 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 468 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 468 Number of spheres polar: 234, nonpolar: 133, out of current total: 468 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -0.58050 19.29007 10.03137 29.64052 10.18410 29.99439 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 238 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 193 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 157 Spheres center of coords (x y z): 8.09411643312102 23.7260827388535 21.3005354140127 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.60587564986186 Final number of output spheres is: 60 Number of polar spheres: 30 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 10