usefragsph not on
There are 41 ligand heavy atoms
Ligand center of coords (x y z): 12.1785609756098 39.8185609756098 12.8535121951219
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1110
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 594
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 589
Number of spheres polar: 167, nonpolar: 244, out of current total: 589
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 2.25535 22.08897 29.83937 49.80700 2.87155 22.78606
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 246
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 199
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 188
Spheres center of coords (x y z): 11.8547990425532 39.1277790957447 13.429662393617
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.30951601077894
Final number of output spheres is: 45
Number of polar spheres: 9
Number of nonpolar spheres: 21
Number of spheres that are near neither polar nor nonpolar receptor atoms: 15
Final number of spheres that are from crystallographic ligand: 41