usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): 27.4654864864865 0.93572972972973 55.4015135135135 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1212 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 600 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 594 Number of spheres polar: 200, nonpolar: 200, out of current total: 594 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 18.86900 37.41470 -9.02891 10.91484 45.48162 65.39429 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 229 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 191 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 164 Spheres center of coords (x y z): 26.7429669512195 2.67072018292683 55.2438617073171 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.11090098521784 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 37