usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 11.56865625 23.68034375 19.06965625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1149 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 582 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 580 Number of spheres polar: 240, nonpolar: 190, out of current total: 580 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 1.58051 21.46168 14.10009 30.97238 9.20974 28.97115 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 331 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 282 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 254 Spheres center of coords (x y z): 10.2912590551181 24.5211733464567 19.7125636614173 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.29162955349087 Final number of output spheres is: 60 Number of polar spheres: 20 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 32