usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 27.1935882352941 0.658588235294118 55.3464411764706 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1158 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 589 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 583 Number of spheres polar: 173, nonpolar: 197, out of current total: 583 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.25028 37.12198 -9.28625 10.57600 45.34686 65.21959 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 213 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 180 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 156 Spheres center of coords (x y z): 27.3175992948718 2.33025243589744 56.2700143589743 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.06553341328903 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 15 Final number of spheres that are from crystallographic ligand: 34