usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): 44.1305925925926 22.7051111111111 48.6258888888889 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 968 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 613 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 608 Number of spheres polar: 253, nonpolar: 179, out of current total: 608 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 34.18039 54.06880 12.75062 32.47159 38.73061 58.62551 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 340 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 288 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 253 Spheres center of coords (x y z): 46.1411103952569 24.2114745454545 48.1070027667985 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.0881604983617 Final number of output spheres is: 60 Number of polar spheres: 28 Number of nonpolar spheres: 14 Number of spheres that are near neither polar nor nonpolar receptor atoms: 18 Final number of spheres that are from crystallographic ligand: 27