usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): -0.688633333333333 17.6881 22.8760666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 932 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 491 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 483 Number of spheres polar: 137, nonpolar: 172, out of current total: 483 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.62624 9.29748 11.40805 25.06443 12.91676 30.59227 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 196 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 166 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 158 Spheres center of coords (x y z): -2.43957341772152 18.8398189873418 23.304928164557 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.65857492387457 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 30