usefragsph not on
There are 9 ligand heavy atoms
Ligand center of coords (x y z): 25.4445555555556 43.6742222222222 16.5874444444444
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 672
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 463
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 463
Number of spheres polar: 235, nonpolar: 139, out of current total: 463
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 15.46282 34.59066 34.23714 53.43468 6.80648 26.52792
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 231
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 204
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 182
Spheres center of coords (x y z): 24.4048606043956 47.9025722527473 18.0791645604396
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 7.33174088549209
Final number of output spheres is: 60
Number of polar spheres: 27
Number of nonpolar spheres: 17
Number of spheres that are near neither polar nor nonpolar receptor atoms: 16
Final number of spheres that are from crystallographic ligand: 9