usefragsph not on
There are 9 ligand heavy atoms
Ligand center of coords (x y z): 29.179 14.5658888888889 16.8578888888889
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 680
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 492
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 492
Number of spheres polar: 256, nonpolar: 139, out of current total: 492
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 19.87765 38.25813 5.69630 23.99417 7.08836 26.82739
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 223
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 188
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 146
Spheres center of coords (x y z): 30.1167526027397 10.8954162328767 19.0336292465754
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.2843948085774
Final number of output spheres is: 60
Number of polar spheres: 39
Number of nonpolar spheres: 15
Number of spheres that are near neither polar nor nonpolar receptor atoms: 6
Final number of spheres that are from crystallographic ligand: 9