usefragsph not on There are 8 ligand heavy atoms Ligand center of coords (x y z): 29.265875 14.576375 17.365875 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 774 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 466 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 465 Number of spheres polar: 192, nonpolar: 153, out of current total: 465 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 19.37360 39.25225 5.34505 23.66533 7.44441 27.30732 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 251 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 215 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 171 Spheres center of coords (x y z): 30.393572631579 10.9099037426901 18.0919612280702 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.87378523919132 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 8