usefragsph not on There are 11 ligand heavy atoms Ligand center of coords (x y z): 30.0292727272727 13.4397272727273 16.3021818181818 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 677 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 466 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 464 Number of spheres polar: 190, nonpolar: 165, out of current total: 464 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.05028 39.85395 5.31823 23.09037 6.65691 26.23645 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 206 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 146 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 103 Spheres center of coords (x y z): 31.5564339805825 10.5961982524272 18.2779352427185 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.29649061775984 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 11