usefragsph not on There are 11 ligand heavy atoms Ligand center of coords (x y z): 30.0292727272727 13.4397272727273 16.3021818181818 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 677 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 466 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 464 Number of spheres polar: 190, nonpolar: 165, out of current total: 464 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 20.05028 39.85395 5.31823 23.09037 6.65691 26.23645 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 280 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 217 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 173 Spheres center of coords (x y z): 31.0159975144509 10.7330578034682 17.8285582080925 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.43083468354007 Final number of output spheres is: 60 Number of polar spheres: 26 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 11