usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): -1.49746666666667 15.2173333333333 19.3953333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 760 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 437 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 437 Number of spheres polar: 191, nonpolar: 153, out of current total: 437 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.30976 8.39720 5.28132 22.14974 9.40932 29.39093 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 155 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 126 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 109 Spheres center of coords (x y z): -2.73414669724771 18.0178079816514 21.3136436697248 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.08412292024328 Final number of output spheres is: 45 Number of polar spheres: 24 Number of nonpolar spheres: 14 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 15