usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): -1.49746666666667 15.2173333333333 19.3953333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 760 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 437 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 437 Number of spheres polar: 191, nonpolar: 153, out of current total: 437 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.30976 8.39720 5.28132 22.14974 9.40932 29.39093 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 237 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 202 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 178 Spheres center of coords (x y z): -2.97039028089888 18.0216861797753 21.0658704494382 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.38080420085779 Final number of output spheres is: 60 Number of polar spheres: 27 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 15