usefragsph not on There are 8 ligand heavy atoms Ligand center of coords (x y z): 28.961875 15.279375 16.72075 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 626 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 475 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 468 Number of spheres polar: 230, nonpolar: 141, out of current total: 468 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 19.10038 38.92466 6.67523 25.16110 6.73717 26.67200 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 239 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 209 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 110 Spheres center of coords (x y z): 28.2639249090909 12.1013859090909 19.7465503636364 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.31494238285675 Final number of output spheres is: 60 Number of polar spheres: 33 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 8