usefragsph not on
There are 9 ligand heavy atoms
Ligand center of coords (x y z): 45.2977777777778 20.575 50.7093333333333
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 554
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 463
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 451
Number of spheres polar: 170, nonpolar: 135, out of current total: 451
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 36.42990 54.73816 10.87900 29.58655 40.72079 60.61981
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 229
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 200
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 164
Spheres center of coords (x y z): 47.443524207317 24.0094481707317 48.6171176219512
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.96474982911123
Final number of output spheres is: 60
Number of polar spheres: 22
Number of nonpolar spheres: 20
Number of spheres that are near neither polar nor nonpolar receptor atoms: 18
Final number of spheres that are from crystallographic ligand: 9