usefragsph not on There are 11 ligand heavy atoms Ligand center of coords (x y z): 45.4700909090909 21.5345454545455 50.2096363636364 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 647 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 418 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 406 Number of spheres polar: 158, nonpolar: 120, out of current total: 406 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 35.89997 55.27869 11.62525 29.95466 40.44330 59.92089 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 240 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 209 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 172 Spheres center of coords (x y z): 47.8250334302326 23.8810068023256 48.9927751162791 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.45439448976982 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 11