There are 9 ligand heavy atoms Ligand center of coords (x y z): -3.048 8.77744444444445 19.7078888888889 useligsph not on Starting number of spheres from sph/sph cluster 0: 809 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 683 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 683 Number of spheres polar: 358, nonpolar: 201, out of current total: 683 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -14.18477 7.41623 -3.19318 19.73861 8.14150 30.77790 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 205 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 165 No crystallographic spheres present, so determining sphere nearest center of ligand (x y z): -3.048 8.77744444444445 19.7078888888889 Center point: 80 xyz: -3.52191 8.69311 19.86290 After continuity checking, number of spheres is: 118 Final number of output spheres is: 118 Number of polar spheres: 49 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 43 Final number of spheres that are from crystallographic ligand: 0