usefragsph not on
There are 9 ligand heavy atoms
Ligand center of coords (x y z): -3.048 8.77744444444445 19.7078888888889
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 809
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 592
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 592
Number of spheres polar: 300, nonpolar: 188, out of current total: 592
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.97008 6.71089 -1.17551 18.04467 10.38140 29.66781
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 277
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 230
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 167
Spheres center of coords (x y z): -3.7356116766467 4.53048844311377 20.1795124550898
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.48656247777844
Final number of output spheres is: 60
Number of polar spheres: 40
Number of nonpolar spheres: 11
Number of spheres that are near neither polar nor nonpolar receptor atoms: 9
Final number of spheres that are from crystallographic ligand: 9