usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 50.6226176470588 71.7427352941177 -29.9897941176471 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1112 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 651 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 651 Number of spheres polar: 209, nonpolar: 286, out of current total: 651 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 40.63047 60.60249 61.78160 81.64172 -39.97966 -20.58331 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 214 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 174 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 137 Spheres center of coords (x y z): 48.9166959854015 73.6053978102189 -29.8747664963504 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.16886791553606 Final number of output spheres is: 45 Number of polar spheres: 7 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 34