There are 9 ligand heavy atoms Ligand center of coords (x y z): 53.1638888888889 67.4842222222222 -29.115 useligsph not on Starting number of spheres from sph/sph cluster 0: 765 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 644 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 643 Number of spheres polar: 326, nonpolar: 184, out of current total: 643 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 41.39922 65.12856 55.85288 78.85091 -40.91792 -17.30096 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 210 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 178 No crystallographic spheres present, so determining sphere nearest center of ligand (x y z): 53.1638888888889 67.4842222222222 -29.115 Center point: 83 xyz: 53.31764 68.24602 -29.00950 After continuity checking, number of spheres is: 120 Final number of output spheres is: 120 Number of polar spheres: 35 Number of nonpolar spheres: 35 Number of spheres that are near neither polar nor nonpolar receptor atoms: 50 Final number of spheres that are from crystallographic ligand: 0