usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 42.3185 23.2120714285714 53.8872857142857 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1131 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 627 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 624 Number of spheres polar: 229, nonpolar: 231, out of current total: 624 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 32.36517 52.31807 13.21906 31.99764 43.90985 63.80000 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 218 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 178 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 153 Spheres center of coords (x y z): 43.6154116339869 24.6939571895425 53.3205597385621 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.19378361781186 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 28