usefragsph not on
There are 28 ligand heavy atoms
Ligand center of coords (x y z): 42.3185 23.2120714285714 53.8872857142857
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1131
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 627
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 624
Number of spheres polar: 229, nonpolar: 231, out of current total: 624
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 32.36517 52.31807 13.21906 31.99764 43.90985 63.80000
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 359
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 302
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 265
Spheres center of coords (x y z): 43.7878898490566 24.4716178113208 53.5094742264151
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.14576752304316
Final number of output spheres is: 60
Number of polar spheres: 20
Number of nonpolar spheres: 28
Number of spheres that are near neither polar nor nonpolar receptor atoms: 12
Final number of spheres that are from crystallographic ligand: 28