usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 43.7380666666667 23.5137 53.7626333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 989 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 456 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 451 Number of spheres polar: 192, nonpolar: 140, out of current total: 451 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.74199 53.68948 13.51663 32.88778 43.85741 63.72042 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 264 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 213 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 186 Spheres center of coords (x y z): 43.9433388709677 24.0929022580645 53.1985238709677 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.79157507555336 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 30