usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): -1.43816666666667 19.4431 17.4725666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 809 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 449 WARNING: removing a crystallographic sphere that is distance 7.30984226916012 angstroms from closest receptor atom WARNING: removing a crystallographic sphere that is distance 7.21310682022663 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 444 Number of spheres polar: 153, nonpolar: 143, out of current total: 444 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.35227 8.52262 9.49200 25.89407 7.59637 27.46852 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 279 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 244 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 174 Spheres center of coords (x y z): -3.21214241379311 18.395780862069 19.6138142528736 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.30028590929933 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 21 Final number of spheres that are from crystallographic ligand: 28