There are 9 ligand heavy atoms Ligand center of coords (x y z): 53.2156666666667 67.3122222222222 -29.0727777777778 useligsph not on Starting number of spheres from sph/sph cluster 0: 783 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 684 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 683 Number of spheres polar: 370, nonpolar: 186, out of current total: 683 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 41.38087 65.14415 55.40234 79.30244 -40.99357 -17.37174 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 226 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 172 No crystallographic spheres present, so determining sphere nearest center of ligand (x y z): 53.2156666666667 67.3122222222222 -29.0727777777778 Center point: 130 xyz: 53.23050 67.48600 -29.14524 After continuity checking, number of spheres is: 116 Final number of output spheres is: 116 Number of polar spheres: 33 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 50 Final number of spheres that are from crystallographic ligand: 0